Caver viewer-user guide doc



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User Guide
Version 1.0 beta



CaverSoft, Ltd.

HCI Laboratory, Faculty of Informatics, Masaryk University
Loschmidt Laboratories, Faculty of Science, Masaryk University

The software package is provided "as is" without warranty of any kind. In no event shall the author or his employer beheld responsible for any damage resulting from the use of this software. The program package, including source codes, example data sets, executables, and this documentation, is distributed free of charge for academic use only. Permission is granted to copy and use programs in the package provided no fee is charged for it and provided that this copyright notice is not removed. For the commercial version, please contact CaverSoft, Ltd. – info@caversoft.com


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Software features
Guided examples
Minimal configuration
File oopen structure(s)…
Exit closes the caver analyst application.
Scene drag rotation
Structure visualization
Van der waals radii
Detailed surface
Tunnel ocomputation
Help oabout caver analyst
Structure points
Structure surface
Tunnel tube surface
Desired structure is active
Show/hide structure
Configure protonation of titratable residues…
Remove ostructure –
Changing visualization style
Global manipulation
Starting point definition
Absolute position
Starting point optimization
Min. probe radius
Residues included into tunnel computation
Hide inactive tunnels
Avg_throughput
Throughput –
Radius [å] – radius of the corresponding sphere. residues table
Individual bottleneck lining residues
Atoms allows the user to select individual atoms. residues
Activate/deactivate clip plane
Exploring results
Launching tunnel computation



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